utils.h

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// Utility functions
 
#ifndef UTILS_H
#define UTILS_H
 
#include <htslib/sam.h>
#include <htslib/synced_bcf_reader.h>
 
#include <string>
#include <mutex>
#include <chrono>
 
 
// Print a message to stdout in a thread-safe manner
void printMessage(std::string message);
 
// Print an error message to stderr in a thread-safe manner
void printError(std::string message);
 
std::string getElapsedTime(std::chrono::high_resolution_clock::time_point start, std::chrono::high_resolution_clock::time_point end);
 
void printMemoryUsage(const std::string &functionName);
 
bool fileExists(const std::string &filepath);
 
bool isFileEmpty(const std::string &filepath);
 
void closeJSON(const std::string & filepath);
 
#endif // UTILS_H