utils.h File Reference

#include <htslib/sam.h>
#include <htslib/synced_bcf_reader.h>

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Functions
void	printProgress (int progress, int total)
bool	isChrNotation (std::string vcf_filepath)
void	printMessage (std::string message)
void	printError (std::string message)
std::string	getElapsedTime (std::chrono::high_resolution_clock::time_point start, std::chrono::high_resolution_clock::time_point end)
std::string	removeChrPrefix (std::string chr)
void	printMemoryUsage (const std::string &functionName)
bool	fileExists (const std::string &filepath)
bool	isFileEmpty (const std::string &filepath)
void	closeJSON (const std::string &filepath)

Function Documentation

closeJSON()

void closeJSON

(

const std::string &

filepath

)

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fileExists()

bool fileExists

(

const std::string &

filepath

)

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getElapsedTime()

std::string getElapsedTime	(	std::chrono::high_resolution_clock::time_point	start,
		std::chrono::high_resolution_clock::time_point	end
	)

isChrNotation()

bool isChrNotation

(

std::string

vcf_filepath

)

isFileEmpty()

bool isFileEmpty

(

const std::string &

filepath

)

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printError()

void printError

(

std::string

message

)

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printMemoryUsage()

void printMemoryUsage

(

const std::string &

functionName

)

printMessage()

void printMessage

(

std::string

message

)

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printProgress()

void printProgress	(	int	progress,
		int	total
	)

removeChrPrefix()

std::string removeChrPrefix

(

std::string

chr

)