ContextSV 0.0.1
Integrative SV calling.
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InputData Member List

This is the complete list of members for InputData, including all inherited members.

bam_filepathInputDataprivate
chr_covInputDataprivate
fasta_queryInputDataprivate
getBAMFilepath()InputData
getChrCov(std::string chr, double &cov)InputData
getOutputDir()InputData
getPFBFilepath()InputData
getRefGenome()InputData
getRegion()InputData
getRegionChr()InputData
getRegionEnd()InputData
getRegionSet()InputData
getRegionStart()InputData
getSequence(std::string chr, int pos_start, int pos_end)InputData
getSNPFilepath()InputData
getWindowSize()InputData
InputData()InputData
output_dirInputDataprivate
pfb_filepathInputDataprivate
ref_filepathInputDataprivate
regionInputDataprivate
region_chrInputDataprivate
region_endInputDataprivate
region_setInputDataprivate
region_startInputDataprivate
setBAMFilepath(std::string filepath)InputData
setChrCov(std::string chr_cov)InputData
setOutputDir(std::string dirpath)InputData
setPFBFilepath(std::string filepath)InputData
setRefGenome(std::string fasta_filepath)InputData
setRegion(std::string region)InputData
setSNPFilepath(std::string filepath)InputData
setWindowSize(int window_size)InputData
snp_vcf_filepathInputDataprivate
window_sizeInputDataprivate