ContextSV
0.0.1
Integrative SV calling.
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InputData Member List
This is the complete list of members for
InputData
, including all inherited members.
bam_filepath
InputData
private
chr_cov
InputData
private
fasta_query
InputData
private
getBAMFilepath
()
InputData
getChrCov
(std::string chr, double &cov)
InputData
getOutputDir
()
InputData
getPFBFilepath
()
InputData
getRefGenome
()
InputData
getRegion
()
InputData
getRegionChr
()
InputData
getRegionEnd
()
InputData
getRegionSet
()
InputData
getRegionStart
()
InputData
getSequence
(std::string chr, int pos_start, int pos_end)
InputData
getSNPFilepath
()
InputData
getWindowSize
()
InputData
InputData
()
InputData
output_dir
InputData
private
pfb_filepath
InputData
private
ref_filepath
InputData
private
region
InputData
private
region_chr
InputData
private
region_end
InputData
private
region_set
InputData
private
region_start
InputData
private
setBAMFilepath
(std::string filepath)
InputData
setChrCov
(std::string chr_cov)
InputData
setOutputDir
(std::string dirpath)
InputData
setPFBFilepath
(std::string filepath)
InputData
setRefGenome
(std::string fasta_filepath)
InputData
setRegion
(std::string region)
InputData
setSNPFilepath
(std::string filepath)
InputData
setWindowSize
(int window_size)
InputData
snp_vcf_filepath
InputData
private
window_size
InputData
private
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