Definition sv_caller.h:12
int max_indel_dist
Definition sv_caller.h:16
InputData * input_data
Definition sv_caller.h:21
SVData detectSVsFromCIGAR(std::string chr, int32_t pos, uint32_t *cigar, int cigar_len)
Definition sv_caller.cpp:35
int min_mapq
Definition sv_caller.h:20
SVData run()
Definition sv_caller.cpp:24
int min_sv_size
Definition sv_caller.h:19
SVData detectSVsFromSplitReads()
Definition sv_caller.cpp:152