ContextSV 0.0.1
Integrative SV calling.
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types.h File Reference
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Typedefs

using SNPLocation = std::pair< std::string, int >
 
using SNPToCNVMap = std::map< SNPLocation, int >
 
using SVCandidate = std::tuple< std::string, int, int, std::string >
 
using SVInfo = std::pair< int, int >
 
using SVDepthMap = std::map< SVCandidate, SVInfo >
 
using AlignmentData = std::tuple< std::string, int, int, int >
 
using AlignmentVector = std::vector< AlignmentData >
 
using QueryMap = std::map< std::string, AlignmentVector >
 

Typedef Documentation

◆ AlignmentData

using AlignmentData = std::tuple<std::string, int, int, int>

◆ AlignmentVector

using AlignmentVector = std::vector<AlignmentData>

◆ QueryMap

using QueryMap = std::map<std::string, AlignmentVector>

◆ SNPLocation

using SNPLocation = std::pair<std::string, int>

◆ SNPToCNVMap

using SNPToCNVMap = std::map<SNPLocation, int>

◆ SVCandidate

using SVCandidate = std::tuple<std::string, int, int, std::string>

◆ SVDepthMap

using SVDepthMap = std::map<SVCandidate, SVInfo>

◆ SVInfo

using SVInfo = std::pair<int, int>