SVCaller Class Reference

#include <sv_caller.h>

Collaboration diagram for SVCaller:

Public Member Functions
	SVCaller (InputData &input_data)
SVData	run ()

Private Member Functions
SVData	detectSVsFromCIGAR (std::string chr, int32_t pos, uint32_t *cigar, int cigar_len)
SVData	detectSVsFromSplitReads ()

Private Attributes
int	max_indel_dist = 10
int	min_sv_size = 50
int	min_mapq = 20
InputData *	input_data

Constructor & Destructor Documentation

SVCaller()

SVCaller::SVCaller

(

InputData &

input_data

)

Member Function Documentation

detectSVsFromCIGAR()

SVData SVCaller::detectSVsFromCIGAR ( std::string  chr, int32_t  pos, uint32_t *  cigar, int  cigar_len  )

private

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detectSVsFromSplitReads()

SVData SVCaller::detectSVsFromSplitReads ( )

private

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run()

SVData SVCaller::run

(

)

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Member Data Documentation

input_data

InputData* SVCaller::input_data

private

max_indel_dist

int SVCaller::max_indel_dist = 10

private

min_mapq

int SVCaller::min_mapq = 20

private

min_sv_size

int SVCaller::min_sv_size = 50

private

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The documentation for this class was generated from the following files:

• include/sv_caller.h
• src/sv_caller.cpp