sv_types.h File Reference

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Namespaces
namespace	sv_types

Typedefs
using	sv_types::SVEvidenceFlags = std::bitset< 10 >

Enumerations
enum class	sv_types::SVType {   sv_types::UNKNOWN = -1 , sv_types::DEL = 0 , sv_types::DUP = 1 , sv_types::INV = 2 ,   sv_types::INS = 3 , sv_types::BND = 4 , sv_types::NEUTRAL = 5 , sv_types::LOH = 6 }
enum class	sv_types::Genotype { sv_types::HOMOZYGOUS_REF = 0 , sv_types::HETEROZYGOUS = 1 , sv_types::HOMOZYGOUS_ALT = 2 , sv_types::UNKNOWN = 3 }
enum class	sv_types::SVDataType {   sv_types::CIGARINS = 0 , sv_types::CIGARDEL = 1 , sv_types::CIGARCLIP = 2 , sv_types::SPLIT = 3 ,   sv_types::SPLITDIST1 = 4 , sv_types::SPLITDIST2 = 5 , sv_types::SPLITINV = 6 , sv_types::SUPPINV = 7 ,   sv_types::HMM = 8 , sv_types::UNKNOWN = 9 }

Functions
std::string	sv_types::getSVTypeString (SVType sv_type)
std::string	sv_types::getSVAlignmentTypeString (SVEvidenceFlags aln_type)
SVType	sv_types::getSVTypeFromCNState (int cn_state)
std::string	sv_types::getGenotypeString (Genotype genotype)
std::string	sv_types::getSVTypeSymbol (SVType sv_type)
bool	sv_types::isValidCopyNumberUpdate (SVType sv_type, SVType updated_sv_type)

Variables
const std::unordered_map< SVType, std::string >	sv_types::SVTypeString
const std::unordered_map< SVType, std::string >	sv_types::SVTypeSymbol
const std::unordered_map< Genotype, std::string >	sv_types::GenotypeString
const std::unordered_map< SVDataType, std::string >	sv_types::SVDataTypeString
const std::unordered_map< int, SVType >	sv_types::CNVTypeMap