OpenBioinformatics.org: An open bioinformatis software repository
This website is created as an index page linking to several bioinformatics software developed by Wang Genomics Lab at CHOP/Penn.
Software distribution websites
- PennCNV: a suite of programs for copy number variation detection in high-density SNP genotyping platform
- GenGen: Genetic genomics analysis of complex data
- ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
- SeqMule: Automated human exome/genome variants detection
- PennCNV-Tumor: New C++ software framework for PennCNV with application to tumor/NGS
- HadoopCNV: New Java software framework that uses MapReduce for CNV detection from whole-genome sequencing data
Web servers
- wANNOVAR: Easy and intuitive web-based access to some functionalities of the ANNOVAR software
- Phenolyzer: Phenotype-based prioritization of candidate genes for human diseases
- iCAGES: Genome-guided precision medicine for cancer treatment
- Enlight: integrating GWAS results with biological annotations
- w4CSeq: automated analysis of 4C-Seq data