fasta_query.h

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// FASTAQuery: A class for querying a FASTA file.
 
#ifndef FASTA_QUERY_H
#define FASTA_QUERY_H
 
#include <string>
#include <map>
 
class FASTAQuery {
    private:
        std::string fasta_filepath;
        std::map<std::string, std::string> chr_to_seq;
 
    public:
        int setFilepath(std::string fasta_filepath);
        std::string getFilepath();
        std::string query(std::string chr, int pos_start, int pos_end);
 
        // Get the chromosome contig lengths in VCF header format
        std::string getContigHeader();
};
class FASTAQuery {…};
 
#endif // FASTA_QUERY_H