ContextSV 0.0.1
Integrative SV calling.
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CNVCaller Member List

This is the complete list of members for CNVCaller, including all inherited members.

calculateLogRRatiosAtSNPS(std::vector< int > snp_positions)CNVCaller
calculateMeanChromosomeCoverage()CNVCaller
calculateWindowLogRRatio(double mean_chr_cov, int start_pos, int end_pos)CNVCaller
chr_mean_coverageCNVCallerprivate
CNVCaller(InputData &input_data)CNVCaller
getSNPPopulationFrequencies(std::vector< int > snp_locations)CNVCaller
input_dataCNVCallerprivate
readSNPBAFs()CNVCaller
run()CNVCaller
saveToTSV(std::string filepath, std::vector< int > snp_locations, std::vector< double > bafs, std::vector< double > logr_ratios, std::vector< int > state_sequence)CNVCaller