ContextSV v1.0.0
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ReferenceGenome Member List

This is the complete list of members for ReferenceGenome, including all inherited members.

compare(const std::string &chr, uint32_t pos_start, uint32_t pos_end, const std::string &compare_seq, float match_threshold) constReferenceGenome
getChromosomeLength(std::string chr) constReferenceGenome
getChromosomes() constReferenceGenome
getContigHeader() constReferenceGenome
getFilepath() constReferenceGenome
query(const std::string &chr, uint32_t pos_start, uint32_t pos_end) constReferenceGenome
ReferenceGenome(std::shared_mutex &shared_mutex)ReferenceGenomeinline
setFilepath(std::string fasta_filepath)ReferenceGenome