This is the complete list of members for CNVCaller, including all inherited members.

calculateMeanChromosomeCoverage(const std::vector< std::string > &chromosomes, std::unordered_map< std::string, std::vector< uint32_t > > &chr_pos_depth_map, std::unordered_map< std::string, double > &chr_mean_cov_map, const std::string &bam_filepath, int thread_count) const	CNVCaller
CNVCaller(std::shared_mutex &shared_mutex)	CNVCaller	inline
getGenotypeFromCNState(int cn_state) const	CNVCaller	inline
readSNPAlleleFrequencies(std::string chr, uint32_t start_pos, uint32_t end_pos, std::vector< uint32_t > &snp_pos, std::unordered_map< uint32_t, double > &snp_baf, std::unordered_map< uint32_t, double > &snp_pfb, const InputData &input_data) const	CNVCaller
runCIGARCopyNumberPrediction(std::string chr, std::vector< SVCall > &sv_candidates, const CHMM &hmm, double mean_chr_cov, const std::vector< uint32_t > &pos_depth_map, const InputData &input_data) const	CNVCaller
runCopyNumberPrediction(std::string chr, const CHMM &hmm, uint32_t start_pos, uint32_t end_pos, double mean_chr_cov, const std::vector< uint32_t > &pos_depth_map, const InputData &input_data) const	CNVCaller
saveSVCopyNumberToJSON(SNPData &before_sv, SNPData &after_sv, SNPData &snp_data, std::string chr, uint32_t start, uint32_t end, std::string sv_type, double likelihood, const std::string &filepath) const	CNVCaller
saveSVCopyNumberToTSV(SNPData &snp_data, std::string filepath, std::string chr, uint32_t start, uint32_t end, std::string sv_type, double likelihood) const	CNVCaller
StateGenotypeMap	CNVCaller